This Python package provides methods for accessing and analysing data from MalariaGEN.
The malariagen_data Python package is available from the Python
package index (PyPI) and can be installed via pip, e.g.:
pip install malariagen-dataDocumentation of classes and methods in the public API are available from the following locations:
See GitHub releases for release notes.
To get setup for development, see this video if you prefer VS Code, or this older video if you prefer PyCharm, and the instructions below.
Detailed instructions can be found in the Contributors guide.
See AI use policy and guidelines for more details.
Create a new GitHub release. That's it. This will automatically trigger publishing of a new release to PyPI and a new version of the documentation via GitHub Actions.
The version switcher for the documentation can then be updated by
modifying the docs/source/_static/switcher.json file accordingly.
If you use the malariagen_data package in a publication
or include any of its functions or code in other materials (e.g. training resources),
please cite: doi.org/10.5281/zenodo.11173411
Some functions may require additional citations to acknowledge specific contributions. These are indicated in the description for each relevant function.
For any questions, please feel free to contact us at: support@malariagen.net
This project is currently supported by the following grants:
This project was previously supported by the following grants: