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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 265

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 917 183

  3. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 191 37

  4. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 249 78

  5. aplot aplot Public

    Decorate a plot with associated information

    R 126 17

  6. aisdk aisdk Public

    A production-grade framework for building AI-powered applications in R.

    R 5

Repositories

Showing 10 of 120 repositories
  • sclet Public

    A Lightweight Toolkit for Single-Cell Data Analysis

    YuLab-SMU/sclet’s past year of commit activity
    R 8 7 0 1 Updated Feb 8, 2026
  • biomedical-knowledge-mining-book Public

    📚 Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book’s past year of commit activity
    TeX 85 31 21 0 Updated Feb 8, 2026
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE’s past year of commit activity
    R 125 34 22 0 Updated Feb 8, 2026
  • treedata-book-2ed Public

    📖 Data Integration, Manipulation and Visualization of Phylogenetic Trees

    YuLab-SMU/treedata-book-2ed’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 8, 2026
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 1,166 265 362 1 Updated Feb 8, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog’s past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Feb 7, 2026
  • Icare Public
    YuLab-SMU/Icare’s past year of commit activity
    R 1 0 0 0 Updated Feb 6, 2026
  • YuLab-SMU/clusterProfiler-LLM-Supplementary’s past year of commit activity
    Makefile 0 0 0 0 Updated Feb 6, 2026
  • TCMDATA Public
    YuLab-SMU/TCMDATA’s past year of commit activity
    R 4 2 0 1 Updated Feb 5, 2026
  • aisdk Public

    A production-grade framework for building AI-powered applications in R.

    YuLab-SMU/aisdk’s past year of commit activity
    R 5 0 0 0 Updated Feb 4, 2026

Most used topics

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